组氨酸电离能与红外光谱的密度泛涵理论计算研究

doi:10.3964/j.issn.1000-0593(2010)05-1192-06

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Abstract Histidines provide axial ligands to the primary electron donors in photosynthetic reaction centers (RCs) and play an important role in the protein environments of these donors. In this paper the authors present a systematic study of ionization energies and vibrational properties of histidine using hybrid density functional theory (DFT). All calculations were undertaken by using B3LYP method in combination with four basis sets: 6-31G(d), 6-31G(df, p), 6-31+G(d) and 6-311+G(2d,2p) with the aim to investigate how the basis sets influence the calculation results. To investigate solvent effects and gain a detailed understanding of marker bands of histidine, the ionization energies of histidine and the vibrational frequencies of histidine which are unlabeled and ¹³C, ¹⁵N, and ²H labeled in the gas phase, CCl₄, protein environment, THF and water solution, which span a wide range of dielectric constant, were also calculated. Our results showed that: (1) The main geometry parameters of histidine were impacted by basis sets and mediums, and C₂—N₃ and N₃—C₄ bond of imidazole ring of histidine side chain display the maximum bond lengths in the gas phase; (2) single point energies and frequencies calculated were decreased while ionization energies increased with the increasing level of basis sets and diffuse function applied in the same solvent; (3) with the same computational method, the higher the dielectric constant of the solvent used, the lower the ionization energy and vibrational frequency and the higher the intensity obtained. In addition, calculated ionization energy in the gas phase and marker bands of histidine as well as frequency shift upon ¹³C and ¹⁵N labeling at the computationally more expensive 6-311+G(2d,2p) level are in good agreement with experimental observations available in literatures. All calculations indicated that the results calculated by using higher level basis set with diffuse function were more accurate and closer to the experimental value. In conclusion, the results provide useful information for the further studies of the functional and vibrational properties of chlorophyll-a ligated to histidine residue in photosynthetic reaction center.

Key words：Histidine;Ionization energy;Infrared spectrum;Density functional theory;Basis set

Received: 2009-05-08 Accepted: 2009-08-12

ZTFLH:

O657.3

Corresponding Authors: WANG Rui-li E-mail: ruiliw@yahoo.com

Cite this article:

HU Qiong,WANG Guo-ying,LIU Gang, et al. Ionization Energies and Infrared Spectra Studies of Histidine Using Density Functional Theory [J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2010, 30(05): 1192-1197.

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https://www.gpxygpfx.com/EN/10.3964/j.issn.1000-0593(2010)05-1192-06 OR https://www.gpxygpfx.com/EN/Y2010/V30/I05/1192

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