基于一维卷积神经网络和拉曼光谱的肺炎支原体菌株分类

doi:10.3964/j.issn.1000-0593(2022)05-1439-06

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Abstract Mycoplasma pneumoniae is the main cause of human respiratory diseases. Clinically, the symptoms of patients infected with different mycoplasma pneumoniae are very similar, so it is difficult to distinguish the type of mycoplasma pneumoniae according to the symptoms and give medication. Therefore, the accurate identification of mycoplasma pneumoniae strain type is of great significance for the pathogenesis and epidemiological research of the disease, and accurate clinical treatment. Raman spectrum has been paid more and more attention because of its advantages of fast-speed, high efficiency, pollution-free and non-destructive analysis. One-dimensional Convolution Neural Network (1D-CNN) is a kind of pre-feedback network with a deep structure, including Convolution operation. It has been successfully applied in the analysis of speech and vibration signals. The combination of the One-Dimensional Convolution Neural Network and the Raman spectral data of the main genotypes of mycoplasma pneumoniae M129 and FH were used as the research objects to realize mycoplasma classification pneumoniae strains. The spectral data enhancement method expands the original spectral data set, and the one-dimensional convolution neural network model was trained, and the problem of data hunger of convolutional neural network caused by small samples was solved. In order to obtain the best classification effect of mycoplasma pneumoniae and accelerate the learning process, the model structure was optimized, and the best model parameters were determined. Gaussian noise, Poisson noise and multiplicative noise are often mixed in Raman spectral measurement. Gaussian noise, Poisson noise and multiplicative noise are often mixed in Raman spectral measurement. In order to optimize the anti-noise ability of the model, Gaussian noise, Poisson noise and multiplicative noise were superimposed on the original spectrum respectively, and the 1D-CNN model was trained and compared with the models built by traditional algorithms such as LDA, KNN and SVM. The experimental results show that for the Raman spectra superimposed with Gaussian noise, Poisson noise and multiplicative noise, the classification accuracy of the models based on 1D-CNN method has achieved 98.0%, 97.0% and 97.0%, respectively, which are all much higher than those of the models based on LDA, KNN and SVM algorithms. At the same time, the 1D-CNN model can achieve 92.5% classification accuracy when the noise reacheds the 55 dBW interference factor, aiming at the noise with different intensities of 5, 15, 25, 35, 45 and 55 dBW.Therefore, it is feasible to apply a one-dimensional convolutional neural network combined with Raman spectrum technology to the classification of mycoplasma pneumoniae strain types, which has the advantages of strong anti-noise ability and high classification accuracy. This study provides a new idea for the rapid diagnosis of mycoplasma pneumoniae pneumonia.

Key words：Mycoplasma pneumoniae; Raman spectroscopy; Qualitative classification; One dimensional convolution neural network

Received: 2021-04-13 Accepted: 2021-08-09

ZTFLH:

O657.3

Corresponding Authors: MENG Zong E-mail: mzysu@ysu.edu.cn

Cite this article:

ZHAO Yong,HE Men-yuan,WANG Bo-lin, et al. Classification of Mycoplasma Pneumoniae Strains Based on One-Dimensional Convolutional Neural Network and Raman Spectroscopy[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(05): 1439-1444.

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http://www.gpxygpfx.com/EN/10.3964/j.issn.1000-0593(2022)05-1439-06 OR http://www.gpxygpfx.com/EN/Y2022/V42/I05/1439