A Fluoride-Sensor for Kink Structure in DNA Condensation Process
LIU Yan-hui1, 2, ZHANG Jing1, CHEN Ying-bing1, LI Yu-pu3, HU Lin1*
1. Soft Condensed Matter Lab, College of Science, Guizhou University, Guiyang 550025, China 2. State Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100190, China 3. College of Forestry, Guizhou University, Guiyang 550025, China
Abstract:Bloomfield has pointed out that the kink structure occurs for sharp bending during DNA condensation process, until now, which has not been proved by experiments. Using UV Spectrophotometer, the effects of fluoride and chlorine on the polyamine-DNA condensation system can be detected. Fluoride and chlorine both belong to the halogen family, but their effects on spermine-DNA condensation system are totally different. Fluoride ions make blue-shift and hyperchromicity appear in the spermine-DNA condensation system, but chlorine ions only make insignificant hyperchromicity happen in this system. Both fluoride ions and chlorine ions only make insignificant hyperchromicity happen in spermidine-DNA condensation system. Based on the distinguished character of fluoride, a fluoride-sensor for “kink” structure in DNA condensation was developed and the second kind of “kink” structure only appear in the spermine-DNA condensation system.
刘艳辉1, 2,张 婧1,陈盈冰1, 李玉璞3,胡 林1* . 一类检测DNA凝聚过程中“铰链结构”的氟化物探针 [J]. 光谱学与光谱分析, 2014, 34(01): 157-161.
LIU Yan-hui1, 2, ZHANG Jing1, CHEN Ying-bing1, LI Yu-pu3, HU Lin1* . A Fluoride-Sensor for Kink Structure in DNA Condensation Process . SPECTROSCOPY AND SPECTRAL ANALYSIS, 2014, 34(01): 157-161.
[1] Arenzon J J, Stilck J F, Levin Y. Eur. Phys. J. B, 1999, 12: 79. [2] Manning G S. Biophysical Journal, 2006, 91: 3607. [3] Chih-chen Hsieh, Balducci A, Doyle P S. Nano Letters, 2008, 8: 1683. [4] Christine C Conwell, Igor D Vilfan, Nicholas V Hud, PNAS, 2003, 100: 9296. [5] Saito T, Iwaki T, Yoshikawa K. Biophysical Journal, 2009, 96: 1068. [6] ZHANG Jing,HU Lin,LIU Yan-hui(张 婧,胡 林,刘艳辉). Spectroscopy and Spectral Analysis(光谱学与光谱分析), 2012, 32(5): 1306. [7] Patricia G Arscott, Li Anzhi, Victor A. Bloomfield, Biopolymers, 1990, 30: 619. [8] Eric G Plum, Patricia G Arscott, Victor A. Bloomfield, Biopolymers, 1990, 30: 631. [9] Greenwood N N, Earnshaw A. Chemistry of the Elements, 2n ed. Oxford, Bufferworth—Heinemann, 1997. [10] Filip Lankas, Richard Lavery, John H. Maddocks, Structure, 2006, 14: 1527. [11] Mitchell J S, Laughton C A, Sarah A Harris. Nucleic Acids Research, 2011, 39: 3928. [12] Troy A Lionberger, Davide Demurtas, Guillaume Witz,et al. Nucleic Acids Research, 2011, 39: 9820. [13] Chen H, Liu Y, Zhou Z, et al. Physical Review E, 2009, 79: 041962. [14] Amin Ahmed Ouameur, Heidar-Ali Tajmir-Riahi. Journal of Biological Chemistry, 2004, 279: 42041. [15] Burt G Feuerstein, Nagarajan Pattabiraman, Laurence J. Marton, Nucleic Acids Research, 1990, 18: 1271.