摘要: The magnetic resonance spectroscopy (MRS) results are greatly influenced by reconstruction of the spectrum and quantitative analysis. Because of this requirement a number of programs dedicated to MRS data analysis were developed. The selection and use of appropriate software is crucial not only in clinical procedures, but also while carrying out scientific research. The choice of the software to suit the user’s needs should be based on the analysis of the functionality of the program. It is particularly important from the user’s viewpoint to identify what data can be loaded and processed in the program. The specific programs allow the user different degree of control over analysis parameters. Moreover, the programs for MRS data analysis differ in terms of the applied signal processing algorithms. The aim of this work, therefore, is to review available packages designed for MRS data analysis, taking into account their capabilities and limitations.
关键词:NMR data;Analysis;Software packages
Abstract:The magnetic resonance spectroscopy (MRS) results are greatly influenced by reconstruction of the spectrum and quantitative analysis. Because of this requirement a number of programs dedicated to MRS data analysis were developed. The selection and use of appropriate software is crucial not only in clinical procedures, but also while carrying out scientific research. The choice of the software to suit the user’s needs should be based on the analysis of the functionality of the program. It is particularly important from the user’s viewpoint to identify what data can be loaded and processed in the program. The specific programs allow the user different degree of control over analysis parameters. Moreover, the programs for MRS data analysis differ in terms of the applied signal processing algorithms. The aim of this work, therefore, is to review available packages designed for MRS data analysis, taking into account their capabilities and limitations.
Monika Cichocka, Andrzej Urbanik. Various Software Packages for Analysis of Nuclear Magnetic Resonance Spectroscopic Data[J]. 光谱学与光谱分析, 2017, 37(10): 3307-3314.
Monika Cichocka, Andrzej Urbanik. Various Software Packages for Analysis of Nuclear Magnetic Resonance Spectroscopic Data. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2017, 37(10): 3307-3314.
[1] Provencher S W. NMR in Biomedicine,2001,14(4): 260.
[2] Merkel B, et al. Medical Imaging. International Society for Optics and Photonics, 2008.
[3] van den Boogaart, Aad, et al. Engineering in Medicine and Biology Society, 1996. Bridging Disciplines for Biomedicine. Proceedings of the 18th Annual International Conference of the IEEE,1996. 5.
[4] Zhao Qi, et al. Proc. Int. Soc. Mag. Reson. Med.,2005. 13.
[5] Schulte Rolf F, Peter Boesiger. NMR in Biomedicine,2006,19(2): 255.
[6] Crane Jason C, Marram P Olson, Sarah J Nelson. Journal of Biomedical Imaging,2013,(2013): 1.
[7] Jiru F, Skoch A, Wagnerova D, et al. Comput Methods Programs Biomed, 2013, 112(1): 173.
[8] Simonetti A, et al. An Open Source Short Echo Time MR Quantitation Software Solution: AQSES. Technical Report 05-168, KU Leuven, EE Dept.(ESATSISTA), 2005. Available from ftp://ftp.esat.kuleuven.ac.be/pub/SISTA/dsima/abstracts/05-168.html, 2006.
[9] Maudsley A A, et al. NMR in Biomedicine,2006,19(4): 492.
[10] Wilson Martin, et al. Magnetic Resonance in Medicine,2011,65(1): 1.
[11] Jiru F, Skoch A, Wagnerova D, et al. jSIPRO-Spectroscopic Imaging Processing Tool, ESMRMB Congress, Lepzig, 2011.
[12] Mocioiu Victor, et al. BMC Bioinformatics,2015,16(1): 378.
[13] http://www.softpedia.com/get/Science-CAD/3DiCSI.shtml
[14] http://homes.esat.kuleuven.be/~biomed/software.php
[15] http://godzilla.kennedykrieger.org/dsx/
[16] http://gabamrs.blogspot.com/
[17] Mullins Paul G, et al. Neuroimage,2014,86: 43.
[18] Edden Richard A E, et al. Journal of Magnetic Resonance Imaging,2014,40(6): 1445.
[19] Naressi A, et al. Computers in Biology and Medicine,2001,31(4): 269.
[20] http://www.jmrui.eu/welcome-to-the-new-mrui-website/
[21] Stefan D,Di Cesare F, et al. Measurement Science and Technology,2009,20(10): 104035.
[22] https://www.sites.google.com/site/jsiprotool/
[23] http://s-provencher.com/pages/lcmodel.shtml
[24] Fuchs Alexander, et al. Magnetic Resonance in Medicine,2014,71(2): 458.
[25] http://www.mevislab.de/
[26] http://mrir.med.miami.edu/
[27] Young Karl, et al. Magnetic Resonance in Medicine,2010,63(1): 20.
[28] http://www.acornnmr.com/
[29] http://www.mrtm.ethz.ch/research/mr-spectroscopy/physiological-projects/profit.html
[30] http://sourceforge.net/p/sivic/sivicwiki
[31] Crane J C, Olson M P, Nelson S J. Book of Abstracts: International Conference on Magnetic Resonance in Medicine. No. 3354. 2009.
[32] http://tarquin.sourceforge.net/
[33] https://scion.duhs.duke.edu/vespa/