|
|
|
|
|
|
Application of 17 Classification Algorithms for Authentication Research of Various Boletus |
ZHANG Yu1, 2, LI Jie-qing1, LI Tao3, LIU Hong-gao1*, WANG Yuan-zhong2* |
1. College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, China
2. Institute of Medicinal Plants, Yunnan Academy of Agricultural Sciences, Kunming 650200, China
3. College of Resources and Environment, Yuxi Normal University, Yuxi 653100, China |
|
|
Abstract Many wild nocuous fungi are similar to the edible in morphology and biological characteristic, which easily leads to serious food safety incident because it is difficult for farmers to distinguish them just by experience. The progress of wild edible production makes a great contribution to rural economy of Yunnan province where the yield and export volume are highest in China. Rapid authentication of wild edible fungi variety is beneficial for wild edible industry towards healthy development. Meanwhile, the authentication also contributes to the analysis of the genetic relationship between edible mushroom and their breeding. Seven kinds of fungi were collected from Yunnan and other seven origins around Yunnan. Fingerprint of caps and stipe were obtained with Fourier transforms infrared (FTIR) spectrometer, respectively. Cap model, stipe model, low-level data fusion model and mid-level data fusion were established using prepressed spectra according to low- and mid-level fusion strategy combined with decision trees, discriminant analysis, logistic regression classifiers, support vector machines, nearest neighbor classifiers and ensemble classifiers that every model was computed 10 times. The optimal classification algorithm was selected based on the accuracy of training set. Hierarchical cluster analysis (HCA) was executed using the mid-level fusion dataset to judge genetic relationship between seven fungi. The results indicated: (1) The best algorithm of caps, stipe and low-level fusion is linear discrimination that accuracy is 92.8%,96.4%,and 97.6%, respectively. Subspace discriminant is the most optimal in mid-level fusion that accuracy is 100%. (2) The average accuracy of all samples is 93.61%,95.54%,96.99% and 99.88% based on the best model of stipe, cap, low-level data fusion and mid-level data fusion. The performance of mid-level fusion is better than other three models, which indicated that the model could distinguish the highly -similar samples by reducing the influence caused by their origins. (3) The result of HCA based on mid-level fusion dataset displayed that the distance between Boletus magnificus and B. edulis was very close, which showed their chemical information were similar and genetic relationship was close. (4) The result of HCA based on mid-level fusion dataset displayed that the distance between Boletus magnificus and Leccinum duriusculum was very long, which showed their chemical information were different and genetic relationship was inferior. In a word, mid-level data fusion strategy combining FTIR spectra of different parts, subspace discriminant and HCA could effectively distinguish different kinds of edible fungi and judge the genetic relationship, which is a novel method used for variety authentication and genetic relationship judgment of wild edible fungi.
|
Received: 2017-12-09
Accepted: 2018-05-21
|
|
Corresponding Authors:
LIU Hong-gao, WANG Yuan-zhong
E-mail: honggaoliu@126.com; boletus@126.com
|
|
[1] MAO Xiao-lan(卯晓岚). Mycosystema(菌物学报), 2006, 25(3): 345.
[2] BAU Tolgor, BAO Hai-ying, LI Yu(图力古尔, 包海鹰, 李 玉). Mycosystema(菌物学报), 2014, 33(3): 517.
[3] MAO Xiao-lan(卯晓岚). The Macrofungi in China(中国大型真菌). Zhengzhou: Henan Science and Technology Press(郑州: 河南科学技术出版社), 2000.
[4] WEN Hua-an, YANG Zhu-liang, LI Tai-hui, et al(文华安, 杨祝良, 李泰辉, 等). Science World(科学世界), 2013,(10): 56.
[5] ZHOU Zu-fa, LU Na, SONG Ji-ling, et al(周祖法, 陆 娜, 宋吉玲, 等). Journal of Fungal Research(菌物研究), 2017,(3): 188.
[6] Juma I, Mshandete A, Tibuhwa D, et al. Tanzania Journal of Science, 2016, 42(1): 109.
[7] Zhao R L, Li G J, Sánchez-Ramírez S, et al. Fungal Diversity, 2017, 84(1): 43.
[8] Avin F A, Bhassu S, Shin T Y, et al. Journal of Animal & Plant Sciences, 2014, 24(1): 89.
[9] Fan X Z, Zhou Y, Xiao Y, et al. Microbiological Research, 2014, 169(5): 453.
[10] Lu T, Bau T. Biotechnology & Biotechnological Equipment, 2017, 31(7): 1.
[11] Yadav M K, Chandra R, Singh H B, et al. International Journal of Current Microbiology and Applied Sciences, 2017, 6(5): 1260.
[12] YANG Tian-wei, ZHANG Ji, LI Tao, et al(杨天伟, 张 霁, 李 涛, 等). Spectroscopy and Spectral Analysis(光谱学与光谱分析), 2016, 36(11): 3510.
[13] Qi L M, Zhang J, Zhao Y L, et al. Analytical Letters, 2017, 50(9): 1497.
[14] Ouyang Q, Zhao J W, Chen Q S. Analytica Chimica Acta, 2014, 841(23): 68.
[15] Márquez C, López M I, Ruisánchez I, et al. Talanta, 2016, 161: 80.
[16] Reis N, Botelho B G, Franca A S, et al. Food Analytical Methods, 2017, 10(8): 2700.
[17] SUN Su-qin(孙素琴). Analysis of Traditional Chinese Medicine by Infrared Spectroscopy(中药红外光谱分析与鉴定). Beijing: Chemical Industry Press(北京:化学工业出版社), 2010.
[18] He X S, Xi B D, Wei Z M, et al. Chemosphere, 2011, 82(4): 541.
[19] Silva S D, Feliciano R P, Boas L V, et al. Food Chemistry, 2014, 150: 489.
[20] Sergios Theodoridis. Pattern Recognition(模式识别). Translated by LI Jing-jiao(李晶皎,译). Beijing: Publishing House of Electronics Industry(北京:电子工业出版社), 2006.
[21] Zhang L, Li L D, Yang A Q, et al. Pattern Recognition, 2017, 69: 199.
[22] Zhang Y, Zhou G X, Jin J, et al. Neurocomputing, 2017, 225: 103.
[23] Fang J W, Wang L P, Wang Y, et al. Molecular Bio Systems, 2017, 13(8): 1575.
[24] Lu W, Dong X, Qiu L L, et al. Journal of Hazardous Materials, 2017, 326: 130.
[25] Li Y, Zhang J, Li T, et al. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2017, 177: 20.
[26] Vapnik V N. The Nature of Statistical Learning Theory Springer, 1995.
[27] Balcázar J, Dai Y, Osamu Watanabe. Algorithmic Learning Theory Washington, DC, 2001. 119.
[28] Lee Y J, Mangasarian O L. RSVM: Reduced Support Vector Machines,Proc of the First SLAM International on Data Mining, Chicago, 2001.
[29] Srbu C, Naşcu-Briciu R D, Kot-Wasik A, et al. Food Chemistry, 2012, 130(4): 994. |
[1] |
WU Chao1, QIU Bo1*, PAN Zhi-ren1, LI Xiao-tong1, WANG Lin-qian1, CAO Guan-long1, KONG Xiao2. Application of Spectral and Metering Data Fusion Algorithm in Variable Star Classification[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2023, 43(06): 1869-1874. |
[2] |
XU Qi-lei, GUO Lu-yu, DU Kang, SHAN Bao-ming, ZHANG Fang-kun*. A Hybrid Shrinkage Strategy Based on Variable Stable Weighted for Solution Concentration Measurement in Crystallization Via ATR-FTIR Spectroscopy[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2023, 43(05): 1413-1418. |
[3] |
KAN Yu-na1, LÜ Si-qi1, SHEN Zhe1, ZHANG Yi-meng1, WU Qin-xian1, PAN Ming-zhu1, 2*, ZHAI Sheng-cheng1, 2*. Study on Polyols Liquefaction Process of Chinese Sweet Gum (Liquidambar formosana) Fruit by FTIR Spectra With Principal Component Analysis[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2023, 43(04): 1212-1217. |
[4] |
YAN Li-dong1, ZHU Ya-ming1*, CHENG Jun-xia1, GAO Li-juan1, BAI Yong-hui2, ZHAO Xue-fei1*. Study on the Correlation Between Pyrolysis Characteristics and Molecular Structure of Lignite Thermal Extract[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2023, 43(03): 962-968. |
[5] |
LI Zong-xiang1, 2, ZHANG Ming-qian1*, YANG Zhi-bin1, DING Cong1, LIU Yu1, HUANG Ge1. Application of FTIR and XRD in Coal Structural Analysis of Fault
Tectonic[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2023, 43(02): 657-664. |
[6] |
KONG De-ming1, CUI Yao-yao2, 3, ZHONG Mei-yu2, MA Qin-yong2, KONG Ling-fu2. Study on Identification Seawater Submersible Oil Based on Total
Synchronous Fluorescence Spectroscopy Combined With
High-Order Tensor Feature Extraction Algorithm[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2023, 43(01): 62-69. |
[7] |
WANG Wen-jun1, SHA Yun-fei1, WANG Yang-zhong1, YU Jie1, LIU Tai-ang2, ZHANG Xu-feng3, MENG Xiang-zhou3, GE Jiong1*. Discriminating Flavor Styles via Data Fusion of NIR and EN[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2023, 43(01): 133-137. |
[8] |
CHENG Xiao-xiao1, 2, LIU Jian-guo1, XU Liang1*, XU Han-yang1, JIN Ling1, SHEN Xian-chun1, SUN Yong-feng1. Quantitative Analysis and Source of Trans-Boundary Gas Pollution in Industrial Park[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(12): 3762-3769. |
[9] |
ZHANG Hao1, 2, HAN Wei-sheng1, CHENG Zheng-ming3, FAN Wei-wei1, LONG Hong-ming2, LIU Zi-min4, ZHANG Gui-wen5. Thermal Oxidative Aging Mechanism of Modified Steel Slag/Rubber Composites Based on SEM and FTIR[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(12): 3906-3912. |
[10] |
CHEN Jing-yi1, ZHU Nan2, ZAN Jia-nan3, XIAO Zi-kang1, ZHENG Jing1, LIU Chang1, SHEN Rui1, WANG Fang1, 3*, LIU Yun-fei3, JIANG Ling3. IR Characterizations of Ribavirin, Chloroquine Diphosphate and
Abidol Hydrochloride[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(07): 2047-2055. |
[11] |
MA Fang1, HUANG An-min2, ZHANG Qiu-hui1*. Discrimination of Four Black Heartwoods Using FTIR Spectroscopy and
Clustering Analysis[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(06): 1915-1921. |
[12] |
ZHANG Dian-kai1, LI Yan-hong1*, ZI Chang-yu1, ZHANG Yuan-qin1, YANG Rong1, TIAN Guo-cai2, ZHAO Wen-bo1. Molecular Structure and Molecular Simulation of Eshan Lignite[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(04): 1293-1298. |
[13] |
WANG Fang-fang1, ZHANG Xiao-dong1, 2*, PING Xiao-duo1, ZHANG Shuo1, LIU Xiao1, 2. Effect of Acidification Pretreatment on the Composition and Structure of Soluble Organic Matter in Coking Coal[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(03): 896-903. |
[14] |
HU Chao-shuai1, XU Yun-liang1, CHU Hong-yu1, CHENG Jun-xia1, GAO Li-juan1, ZHU Ya-ming1, 2*, ZHAO Xue-fei1, 2*. FTIR Analysis of the Correlation Between the Pyrolysis Characteristics and Molecular Structure of Ultrasonic Extraction Derived From Mid-Temperature Pitch[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(03): 889-895. |
[15] |
YANG Jiong1, 2, QIU Zhi-li1, 4*, SUN Bo3, GU Xian-zi5, ZHANG Yue-feng1, GAO Ming-kui3, BAI Dong-zhou1, CHEN Ming-jia1. Nondestructive Testing and Origin Traceability of Serpentine Jade From Dawenkou Culture Based on p-FTIR and p-XRF[J]. SPECTROSCOPY AND SPECTRAL ANALYSIS, 2022, 42(02): 446-453. |
|
|
|
|