Applications of Chlorophyll Fluorescence in Plant Phenotyping: A Review
CEN Hai-yan1, 2, YAO Jie-ni1, 2, WENG Hai-yong1, 2, XU Hai-xia1, 2, ZHU Yue-ming1, 2, HE Yong1, 2*
1. College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China
2. Key Laboratory of Spectroscopy Sensing, Ministry of Agriculture and Rural Affairs, Hangzhou 310058, China
Abstract：Plant breeding is important for increasing the yield and improving the quality of crop. Modern techniques of plant breeding require various phenotypic traits obtained from a large number of crops in order to cultivate varieties with useful traits. Researchers have been interested in developing nondestructive, fast and efficient plant phenotyping techniques, which could bridge the knowledge gap between the plant phenotype and the genotype. The chlorophyll fluorescence imaging can provide information related to the plant photosynthesis as one of the useful tools in the current phenotyping techniques, which can be used in plant responses to biotic and abiotic stresses and promote the selection of useful plant traits. This paper presents a brief introduction of fluorescence imaging system, methods of fluorescence image analysis and applications in plant phenotyping, and demonstrates challenge issues, technical solutions and potential applications of chlorophyll fluorescence imaging in plant phenotyping.
[1] PAN Ying-hong(潘映红). Acta Automatica Sinica(作物学报), 2015, 41(2): 175.
[2] Rahaman M M, Chen D J, Gillani Z, et al. Frontiers in Plant Science, 2015, 6：619.
[3] WANG Chuan-yu, GUO Xin-yu, DU Jian-jun, et al(王传宇，郭新宇，杜建军，等). Transactions of the Chinese Society of Agricultural Engineering(农业工程学报), 2016, 32(21): 189.
[4] Kuska M, Wahabzada M, Leucker M, et al. Plant Methods, 2015, 11：28.
[5] HE Yong，PENG Ji-yu, LIU Fei, et al(何 勇，彭继宇，刘 飞，等). Transactions of the Chinese Society of Agricultural Engineering(农业工程学报), 2015, 31(3): 174.
[6] Zhang Y J, Xie Z K, Wang Y J, et al. Russian Journal of Plant Physiology, 2011, 58(5): 844.
[7] Deery D M, Rebetzke G J, Jimenez-Berni J A, et al. Frontiers in Plant Science, 2016, 7：1808.
[8] Sperdouli I, Moustakas M. Plant Biology, 2012, 14(1): 118.
[9] Berger S, Benediktyová Z, Matous K, et al. Journal of Experimental Botany, 2007, 58(4): 797.
[10] Massacci A, Nabiev S M, Pietrosanti L, et al. Plant Physiology and Biochemistry, 2008, 46(2): 189.
[11] Fracheboud Y, Haldimann P, Leipner J, et al. Journal of Experimental Botany, 1999, 50(338): 1533.
[12] Lincoln T, Eduardo Z. Plant Physiology(植物生理学). Translated by SONG Chun-peng，WANG Xue-lu, et al(宋纯鹏，王学路，等译). Beijing: Science Press(北京：科学出版社), 2009. 99.
[13] Schreiber U, Schliwa U, Bilger W. Photosynthesis Research, 1986, 10(1-2): 51.
[14] Gorbe E, Calatayud A. Scientia Horticulturae, 2012, 138: 24.
[15] Kalaji H M, Schansker G, Ladle R J, et al. Photosynthesis Research, 2014, 122(2): 121.
[16] Kramer D M, Johnson G, Kiirats O, et al. Photosynthesis Research, 2004, 79(2): 209.
[17] Lazar D. Biochimica Et Biophysica Acta, 1999, 1412(1): 1.
[18] Kautz B, Noga G, Hunsche M. Plant Growth Regulation, 2014, 73(3): 279.
[19] Murchie E H, Lawson T. Journal of Experimental Botany, 2013, 64(13): 3983.
[20] Bresson J, Vasseur F, Dauzat M, et al. Plant Methods, 2015, 11：23.
[21] LIU Lei-zhen, WU Jian-jun, ZHOU Hong-kui, et al(刘雷震，武建军，周洪奎，等). Spectroscopy and Spectral Analysis(光谱学与光谱分析), 2017, 37(9): 2780.
[22] Ehlert B, Hincha D K. Plant Methods, 2008, 4：12.
[23] Chaerle L, Hagenbeek D, De Bruyne E, et al. Plant and Cell Physiology, 2004, 45(7): 887.
[24] Tung J, Goodwin P H, Hsiang T. European Journal of Plant Pathology, 2013, 136(2): 301.
[25] Chaerle L, Hagenbeek D, De Bruyne E, et al. Plant Cell Tissue and Organ Culture, 2007, 91(2): 97.
[26] Matous K, Benediktyova Z, Berger S, et al. Photosynthesis Research, 2006, 90(3): 243.
[27] Pineda M, Soukupová J, Matou K, et al. Photosynthetica, 2008, 46(3): 441.
[28] Mishra A, Mishra K B, Hermiller I I, et al. Plant Signaling & Behavior, 2011, 6(2): 301.
[29] Eguchi A, Konishi A, Hosoi F, et al. Photosynthesis Research, 2007, 91(2-3): 194.
[30] Mishra K B, Iannacone R, Petrozza A, et al. Plant Science, 2012, 182: 79.
[31] Bresson J, Vasseur F, Dauzat M, et al. Plos One, 2014, 9(9): e107607.
[32] Pompeiano A, Landi M, Meloni G, et al. Plant Biosystems, 2017, 151(4): 613.
[33] Mishra A, Heyer A G, Mishra K B. Plant Methods, 2014, 10(1): 1.
[34] Mishra K B, Mishra A, Novotna K, et al. Plant Methods, 2016, 12: 46.
[35] Chen Y E, Liu W J, Su Y Q, et al. Physiologia Plantarum, 2016, 158(2): 225.
[36] Chen D J, Neumann K, Friedel S, et al. Plant Cell, 2014, 26(12): 4636.
[37] Wang Y, An Y, Yu J, et al. Ecological Research, 2016, 31(6): 761.
[38] Guo Y Y, Yu H Y, Kong D S, et al. Photosynthetica, 2016, 54(4): 524.
[39] Lotfi R, Pessarakli M, Gharavi-Kouchebagh P, et al. Crop Journal, 2015, 3(5): 434.
[40] Sharma D K, Andersen S B, Ottosen C O, et al. Physiologia Plantarum, 2015, 153(2): 284.
[41] Sebela D, Quinones C, Olejnickova J, et al. Field Crops Research, 2015, 177: 75.
[42] Humplik J F, Lazar D, Furst T, et al. Plant Methods, 2015, 11: 20.
[43] Rizza F, Pagani D, Gut M, et al. Crop Science, 2011, 51(6): 2759.
[44] ZHANG Jie, LI Tian-lai(张 洁，李天来). Transactions of the Chinese Society of Agricultural Engineering(农业工程学报), 2007, 23(1): 162.
[45] Mariam A, Arianna N, Jiri F, et al. Frontiers in Plant Science, 2016, 7: 1414.
[46] Smdiqui Z S, Cho J I, Park S H, et al. Acta Botanica Croatica, 2014, 73(1): 149.
[47] Rachoski M, Gazquez A, Calzadilla P, et al. Acta Physiologiae Plantarum, 2015, 37(6): 117.
[48] Guo H, Yao J T, Sun Z M, et al. Chinese Journal of Oceanology and Limnology, 2015, 33(2): 410.
[49] Ryan K G, Tay M L, Martin A, et al. Journal of Experimental Marine Biology and Ecology, 2011, 399(2): 156.
[50] Latrach L, Farissi M, Mouradi M, et al. Turkish Journal of Agriculture and Forestry, 2014, 38(3): 320.
[51] De Lucena C C, De Siqueira D L, Martinez H E P, et al. Revista Brasileira De Fruticultura, 2012, 34(4): 1245.
[52] Mehta P, Jajoo A, Mathur S, et al. Plant Physiology and Biochemistry, 2010, 48(1): 16.
[53] Akram M, Farooq S, Afzaal M, et al. Pakistan Journal of Botany, 2006, 38(5): 1739.
[54] Naumann J C, Young D R, Anderson J E. Physiologia Plantarum, 2007, 131(3): 422.
[55] Mandal K, Saravanan R, Maiti S, et al. Journal of Plant Diseases and Protection, 2009, 116(4): 164.
[56] Pineda M, Olejníková J, Cséfalvay L, et al. Journal of Plant Physiology, 2011, 168(17): 2035.
[57] CHEN Bing, WANG Ke-ru, LI Shao-kun, et al(陈 兵，王克如，李少昆，等). Transactions of the Chinese Society of Agricultural Engineering(农业工程学报), 2011, 27(9): 86.
[58] Elke B, Antje G, Herppich W B. Sensors, 2011, 11(4): 3765.
[59] Cen H Y, Weng H Y, Yao J N, et al. Frontiers in Plant Science, 2017, 8: 1509.
[60] Lei R, Jiang H, Hu F, et al. Plant Cell Reports, 2017, 36(2): 327.
[61] Martinez-Ferri E, Zumaquero A, Ariza M T, et al. Plant Disease, 2016, 100(1): 49.
[62] Ivanov D A, Bernards M A. Planta, 2016, 243(1): 263.
[63] Kenny J M, Torre L, Chiacchiarelli L M. Journal of Applied Polymer Science, 2015, 132(45): 42750.
[64] Furbank R T, Tester M. Trends in Plant Science, 2011, 16(12): 635.
[65] Estrada F, Escobar A, Romero-Bravo S, et al. Scientia Horticulturae, 2015, 181: 147.
[66] Rong Z, Yu X, Ottosen C O, et al. BMC Plant Biology, 2017, 17(1): 24.
[67] Harbinson J, Prinzenberg A E, Kruijer W, et al. Current Opinion in Biotechnology, 2012, 23(2): 221.
[68] Mutka A M, Bart R S. Frontiers in Plant Science, 2015, 5: 734.
